Last updated: 2021-08-16

Checks: 2 0

Knit directory: Turati_NatCancer_2021/

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R Markdown file: up-to-date

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Repository version: 9254340

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Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    bulkRNA/
    Ignored:    data/bulk4_counts.rda
    Ignored:    data/bulk4_dds.rda
    Ignored:    data/paper_palette.rda
    Ignored:    data/signatures.rda
    Ignored:    output/deseq2-mini_bulk4_dds.3pts-Treated-vs-Untreated.rds
    Ignored:    output/deseq2-mini_bulk4_dds.pt1-Treated-vs-Untreated.rds
    Ignored:    output/deseq2-mini_bulk4_dds.pt12-Treated-vs-Untreated.rds
    Ignored:    output/deseq2-mini_bulk4_dds.pt13-Treated-vs-Untreated.rds
    Ignored:    output/deseq2-mini_bulk4_dds.pt2-Acutely treated-vs-Chronically treated.rds
    Ignored:    output/deseq2-mini_bulk4_dds.pt2-Acutely treated-vs-Never treated.rds
    Ignored:    output/deseq2-mini_bulk4_dds.pt2-Chronically treated-vs-Never treated.rds
    Ignored:    output/deseq2-mini_bulk4_dds.pt2-Relapse-vs-Never treated.rds
    Ignored:    output/deseq2-mini_bulk4_dds.pt2-Treatment withdrawn-vs-Never treated.rds
    Ignored:    output/fgsea_results.RDS
    Ignored:    output/figures/ExtFig5a_pca_3patients.pdf
    Ignored:    output/figures/ExtFig5b_pca_treatment_response.pdf
    Ignored:    output/figures/Fig5C_fgsea_selected_signatures.pdf
    Ignored:    output/figures/ItemS2.pdf
    Ignored:    output/tables/ExtFig5a_bulkRNAseq_data.xlsx
    Ignored:    output/tables/ExtFig5b_bulkRNAseq_data.xlsx

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/scWGS-index.Rmd) and HTML (docs/scWGS-index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html b6f5b35 Javier Herrero 2021-08-13 Build site.
html 537463a Javier Herrero 2021-08-13 Update site
Rmd 42e5864 Javier Herrero 2021-08-13 Init workflowr website
html 42e5864 Javier Herrero 2021-08-13 Init workflowr website
Under construction
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